Healthy Blueberry Muffins are fluffy, moist, and pack as many blueberries as possible! Make ahead or eat fresh out of the oven for a nutritious breakfast or snack.
We also love these almond flour blueberry muffins, Greek yogurt blueberry muffins and cottage cheese blueberry muffins.
Reader’s Review
Excellent! I rarely have a recipe hit the target first time. I followed exactly, they were perfect – light, delicious, not too sweet, not heavy. Best recipe! I’ll be trying other recipes you have now. Thank you for sharing.
Diana
These healthy blueberry muffins come out moist, light and so fluffy every time! With no refined sugar and nutrient dense ingredients, I can feel good about feeding these muffins to my family for healthy breakfast or snack.
Both kids and adults love these, and you will love them too!
Why You’ll Love This Recipe
- Whole grain flour: By using 100% whole wheat or spelt flour these healthy muffins are full of nutrients plus fiber.
- Naturally sweetened: Skip the refined white sugar, this healthy blueberry muffin recipe uses maple syrup or honey which means less sugar than your giant coffee shop muffins.
- Low oil: Unsweetened applesauce not only keeps them moist, it lowers the use of heavy oils for lighter, better for you blueberry muffin!
- Delicious: Usually, I prefer to eat my berries fresh, however these blueberry muffins deserve even the priciest supermarket January blueberries!
Ingredients for Healthy Blueberry Muffins
- Flour: You can use whole wheat flour or spelt flour. See FAQs below for more options.
- Blueberries: I made these muffins with fresh blueberries but frozen blueberries can be used with great success.
- Applesauce: I use unsweetened applesauce but if sweetened is all you can find, that works. Your muffins will be sweeter. Here is a great Instant Pot applesauce recipe.
- Eggs: 2 large eggs from refrigerator, no need for room temperature ones. Provide lift and binding.
- Any oil: Healthy widely available options are avocado oil, melted coconut oil, grapeseed oil or extra virgin olive oil.
- Liquid sweetener: I love the maple flavor of maple syrup but honey or agave work too. Please do not use any dry sweetener because it will throw off muffin batter consistency and recipe will not work.
- Vanilla extract: Use pure vanilla extract and not artificial for the best flavor.
- Cinnamon: Adds a warm taste and light spice. Can always add a bit of nutmeg too.
- Baking staples: Baking powder and baking soda for texture, and salt to bring out flavors of all other ingredients.
How to Make Healthy Blueberry Muffins
Preheat oven to 425 degrees F and line muffin tin with parchment paper liners or use a silicone muffin pan.
- Combine wet ingredients and leavening agents: In a large bowl, add eggs, applesauce, maple syrup, oil, vanilla, cinnamon, baking powder, baking soda, and salt and whisk well. Ensure the baking powder and soda have completely dissolved.
- Add dry ingredients: Add flour and stir gently just until mixed, don’t overdo it. You can also let batter sit for 3 minutes to absorb the moisture, then give 1-2 final stirs.
- Add berries: Mix blueberries with 1 tablespoon of flour to prevent them from sinking to the bottom of the muffins. Add to the batter and stir a few times just enough to incorporate into the muffin batter.
- Bake: Using trigger cookie dough scoop, fill muffin tin with muffin batter. Bake for 10 minutes at 425 F, reduce heat to 375 F and bake for another 10 minutes or until toothpick inserted in the middle comes out clean. Cool in the muffin pan for 30 minutes before transferring onto a wire rack to cool more.
Tips for Best Results
- Mix batter only until combined: Do not over mix your batter as additional gluten will develop and result in dense muffins. A few patches of flour are OK and better than perfectly smooth batter.
- Keep an eye on muffins while they bake: All ovens vary and I recommend to check your muffins 3 minutes to the end. If toothpick comes out clean, time to remove the muffins. They keep cooking with residual heat in a muffin tin.
- Let them cool completely: These muffins are delicate, light, and fluffy. If you don’t let them cool patiently for 30 minutes, they will deform and fall apart a bit.
- Mini muffins: You can make mini blueberry muffins and bake for 11-13 minutes. Do a toothpick test.
How to Store and Freeze
To store: In our house, a batch of these blueberry muffins won’t last more than 2 days because they are so good! Store them in an airtight container placed in a cool dry place for 3-4 days.
To freeze: Bake and cool muffins completely. Then arrange them in a single layer in resealable plastic bag or any container with a lid. Place in the freezer for up to 3 months.
To reheat: Thaw on a counter for a few hours. Warm up in the oven at 350 F or microwave for 30 seconds for that freshly baked experience.
Storage Tip
Don’t miss my detailed posts how to store muffins and how to freeze muffins to make sure your leftover muffins stay fresh longer.
FAQs
I tested this recipe only with whole wheat flour or spelt flour. Whole wheat pastry flour or white whole wheat flour should work as well. You may use about 2 3/4 cups or 3 cups all-purpose flour but muffins will be less sweet. I think gluten-free flour is more dry and will need adjustment of the recipe. Baking is a science and it’s best to follow the recipe.
Yes, to make these muffins egg-free and also vegan, you can use an equivalent amount of flax eggs or chia seed eggs and be sure to use maple syrup.
Yes, while you can use an equal amount of plain regular yogurt or Greek yogurt instead of applesauce, be prepared for less sweet muffins. You can try to add a few more tablespoons of sweetener with hopes this won’t offset the batter consistency. I recommend to use applesauce though.
Yes, no need to thaw the frozen blueberries. If you are worried about them turning your batter blue, rinse them a few times under cold water, then gently pat dry. Fold them gently into your muffin batter and give a few stirs. Once you notice some blueberry streaks, stop stirring to prevent further bleeding.
More Blueberry Recipes You’ll Love
- Healthy lemon blueberry muffins
- Healthy lemon blueberry bread
- Healthy blueberry banana muffins
- Healthy blueberry breakfast cake
- Healthy blueberry pancakes
- Blueberry Greek yogurt scones
- Blueberry fritters
Healthy Blueberry Muffins
Equipment
Video
Ingredients
- 2 large eggs
- 1 cup applesauce, unsweetened
- 1/2 cup maple syrup or honey
- 1/3 cup avocado oil or coconut oil, melted
- 1 teaspoon pure vanilla extract
- 1 teaspoon cinnamon
- 2 teaspoons baking powder
- 1/2 teaspoon baking soda
- 1/4 teaspoon salt
- 2 1/3 cups spelt flour or whole wheat flour, plus 1 tablespoon for dusting
- 1 1/2 cups blueberries, fresh or frozen
Instructions
- Preheat oven to 425 degrees F and line muffin tin with parchment paper muffin liners or use silicone muffin pan (I used both and didn't spray anything).
- In a large mixing bowl, add eggs, applesauce, maple syrup, oil, vanilla, cinnamon, baking powder, baking soda, and salt. Whisk well to combine, making sure baking powder and soda have dissolved. Add flour and stir gently to mix. Do not over mix.
- In a small bowl, toss blueberries with 1 tablespoon flour, add to the batter and give a few stirs.
- Using large ice cream scoop, fill 12 openings of a muffin pan with batter. Bake for 10 minutes, reduce oven temperature to 375 degrees F, and bake for another 10 minutes or until toothpick inserted in the middle comes out clean.
- Remove from the oven and let muffins cool for at least 30 minutes before transferring onto a cooling rack to cool more or enjoy.
Notes
- Store: Store in an airtight container in a cool dry place for up to 3 – 4 days.
- Freeze: Bake and cool muffins completely. Arrange in a single layer in a resealable plastic bag or any container with a lid. Freeze for up to 3 months.
- Do not overmix batter: Stir a few times, let batter sit and stir again. A few dry flour patches are fine.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.
My kids and I just made these, and we LOVE them! I just substituted gluten free flour and it was terrific. I made a double batch and froze most of them so I can take out a few to thaw whenever we need a healthy snack. Thanks!
So happy to hear your very brave substitute worked out with my healthy blueberry muffins.:)
For a healthy blueberry muffin, these were great! For our family just starting on this journey, the wheat flour was a bit heavy for us when we are used to a half white, half wheat consistency in our baked goods. I also used homemade, chunky applesauce and that might have changed the consistency as well. It was lightly sweetened with honey which was perfect, and they rose beautifully. They are also surprisingly filling and made a nice snack, but I’m sure they would be lovely as a breakfast, too!
Yes. When you switch from white to whole wheat flour it does feel heavy at first. You get used to it or not lol. We are so used to it now. I have a friend who will never convert but she is Italian so… Try spelt flour. It is lighter than whole wheat and same healthy. Good luck! You can do it!
Hi Olena, Just tried these muffins for the first time and I absolutely love it!!! Even though I used 2 bananas instead of applesauce, small grapes instead of blueberries, agave syrup instead of maple syrop :))))) …. and grapeseed oil, it turned out to be very delicuious. Thanks a lot for the recipe!
Those are very smart 1:1 subs.:) My pleasure.
Yum!
These were delicious!
My kids really-really enjoyed these blueberry muffins! They were gone in a day.
Hi! I’m new to your website and I love it! I’ve made these muffins twice now, once with frozen blueberries and once with fresh. They were both delicious! The perfect treat without feeling guilty. I liked the ones with the frozen blueberries better, but my hubby liked them better with the fresh blueberries, so I guess it’s personal taste.
Thanks for sharing such a great/easy recipe!
Hi Rosa. Welcome! Yes, I guess it’s a matter of personal preference. I like with fresh ones.:)
I made these tonight, using fresh blueberries & raspberries. I too ate one hot out of the oven. They are excellent. My 4 & 2 year old will love these. Thank you. ~Amy
You are welcome.
LOVE THESE SO MUCH!! I’m making them now for the 2nd time, and I no longer feel guilty making yummy muffins for my family! They loved them! and I’m so glad I finally found an easy/clean/delish recipe!! Thank you thank you!!
🙂 you are welcome.
I just found this recipe through an affiliate and am eager to try it. BUT – and this is a good thing- they listed the nutritional information. I read through all the comments and priced that people were asking for that info, so here it is:
5. CLEAN EATING BLUEBERRY MUFFINS
Tempted to grab a pastry at the café? Satisfy your sweet tooth by making your own batch of baked goods. Bursting with blueberries, these fluffy muffins are healthy and low in sugar. Recipe makes 12 servings at 1 muffin each.
Nutrition (per serving): Calories: 159; Total Fat: 6g; Saturated Fat: 1g; Monounsaturated Fat: 4g; Cholesterol: 31mg; Sodium: 136mg; Carbohydrate: 24g; Dietary Fiber: 3g; Sugar: 6g; Protein: 4g
Hope this helps!