These are the absolute best Healthy Chocolate Chip Cookies that are soft, perfectly chewy, buttery and loaded with dark chocolate chips. I have perfected my healthy-ier recipe over the years and kids call it “classic”!

Cookies with chocolate like oat flour cookies, almond flour chocolate chip cookies and protein cookies always disappear fast around here.

Healthy chocolate chip cookies stacked on white plate.

I am extremely picky with healthy cookies! When I think of healthy chocolate chip cookies, I envision a layer of soft buttery dough covering chocolate chips like a blanket, and when you bite in, the cookies are chewy. Perfection!

Like almond flour snickerdoodles have to have a soft inside and chewy outside. And healthy oatmeal cookie gotta have a chew as well. Healthy pumpkin cookies with prominent pumpkin flavor. Cookies gotta be worth their calories!

Why You’ll Love This Recipe

  • Tried and true tested recipe: This is a very old recipe of mine that I have changed and perfected over the years. No more maple syrup and applesauce because a real cookie must be made with butter and sugar. The toughest critics, kids, approved!
  • Wholesome ingredients: We use organic cane or coconut sugar which is unrefined sugar that retains a lot of its nutrients minus the pesticides. Whole wheat or (sprouted) spelt flour with bran and germ attached. And organic or grass fed butter. All real food quality ingredients.
  • Less of “bad stuff” without sacrificing the taste: Unlike many traditional recipes online, our recipe uses twice less sugar and butter, resulting in yet soft and chewy cookie. Like a cookie should be!
  • Balance and moderation: Healthy eating is all about maintaining clean taste buds with healthy lifestyle and without diets. So, when you indulge you can really taste the food, get satisfied with a just a few treats and not overeat.

Try this healthy chocolate chip cookie recipe and you will be amazed!!!

Ingredients for Healthy Chocolate Chip Cookies

  • Butter: I used organic salted butter and omitted salt. Unsalted butter works perfectly too. You may use coconut oil but it results in more crispy rather than chewy cookies, with less grooves and more cake like looking cookies.
  • Sugar: I used organic cane sugar. Coconut sugar works too. You can also use all or parts of organic brown sugar as it goes well in CC cookies. I do not recommend to use liquid sweetener as recipe will not work.
  • Whole wheat flour or spelt flour: This time I used whole grain spelt flour. Please don’t use white flour, recipe will need adjustment.

Gluten free cookies? Check out almond flour chocolate chip cookies for gluten free version. Don’t use any other flour like oat flour or coconut flour – recipe will not work.

  • Baking needs: Pure vanilla extract, baking soda and salt if using unsalted butter. No need for baking powder as we do not want cookies to have fluffy texture.
  • Chocolate chips: I use dark chocolate chips because sweetness in a cookie dough is enough already. You can use semi-sweet and more of, if you like.
Whole wheat flour, sugar, salt, vanilla, egg, baking soda, chocolate chips, butter.

How to Make Healthy Chocolate Chip Cookies

  • Make cookie dough: In a large bowl, beat softened butter and sugar with an electric mixer. Then add egg and vanilla, and then dry ingredients – baking soda, salt and flour. Fold in 1/4 cup chocolate chips and your cookie dough is formed.
  • Chill dough and prep: Place cookie dough in the freezer to chill for 20 minutes. This is a must to prevent cookies from spreading. Now is a good time to preheat oven to 350 degrees F and line 2 cookie sheets with unbleached parchment paper or silicone baking mats.
  • Roll and bake: Scoop dough with a regular scoop, roll into balls and place on prepared baking sheets 3 inches apart. Cookies spread, plan for 6 per sheet. Bake cookies for 10 minutes and remove while cookies appear underbaked, puffy and light in color. Dough will settle during cooling.
  • Add more chips and cool: Strategically place remaining 2 tbsp of chocolate chips into cookies while they are still hot. Also you can skip this step and just add all chips into the dough. Let cookies cool on a baking sheet for 15 minutes before transferring onto a cooling rack to cool more.
  • Perfection: As cookies cool, you will see delicious grooves covering chocolate chips like a blanket appearing.

Kids will love when you turn these healthy cookies into dinky doozies! Just sandwich two cookies with healthy buttercream or healthy chocolate frosting.

Tips for Best Cookies

  • Use cold baking sheets: Make sure your baking sheets are cold. If you baked other cookies in them right before, cool them off. I stick mine in the fridge for 5 minutes.
  • Use softened butter: Softened butter means a dent appears when you touch it with a finger. To soften butter, just leave it at room temperature for 3-4 hours. To speed up softening, cut up in cubes and let warm up.
  • Do not overmix the cookie dough: Overmixing will make the cookies more prone to falling apart.
  • Don’t skip chilling the dough: Because this cookie dough contains butter and sugar, it has to be firmed up before baking. If you don’t chill the dough, your cookies will spread like crazy!
  • Do not over bake cookies: With most cookies you want to remove them before they start browning and finish settling during cooling off period. It’s a golden cookie baking rule!
Healthy chocolate chip cookies on a plate.

Storing and Shipping Cookies

Storing: Store in a cool dry place in a ventilated container for up to 5 days.

Freezing: Bake, cool cookies completely, place in a resealable plastic bag or airtight container and freeze for up to 3 months. Thaw on a counter for a few hours.

Shipping: A batch of chocolate chip treats are perfect healthy Christmas cookies for shipping to family and friends. Bake and cool. Place 2 cookies back to back and wrap with plastic wrap. Then place in a plastic container with a lid, stuffed with tissue so no empty space, inside shipping box and voila.

More Healthy Cookies Recipes

And may I also suggest not a cookie but this healthy pumpkin chocolate chip bread that is irresistible year round for healthy snacks!

Healthy Chocolate Chip Cookies with one broken in half on a plate.

Healthy Chocolate Chip Cookies

These are the absolute BEST Healthy Chocolate Chip Cookies that are soft, perfectly chewy, buttery and loaded with dark chocolate chips. I have perfected my healthy-ier recipe over the years and kids called it Classic!
4.95 from 39 votes
Servings 12 cookies
Calories 166
Prep Time 12 minutes
Cook Time 10 minutes
Chilling Time 20 minutes
Total Time 42 minutes

Ingredients 
 

Instructions 

  • In a large bowl, add butter and sugar; beat with a mixer until creamy.
  • Add egg and vanilla extract, beat until combined. Add baking soda, salt and flour; beat until cookie dough is formed. Add 1/4 cup chocolate chips and stir with spatula.
  • Place cookie dough in the freezer to chill for 20 minutes. In the meanwhile, preheat oven to 350 degrees F and line 2 cookie sheets with unbleached parchment paper or silicone baking mats.
  • Scoop dough with a regular scoop, roll into balls and place on prepared baking sheets 3 inches apart. Cookies spread.
  • Bake for 10 minutes and remove while cookies appear underbaked, puffy and light in color. Strategically place remaining 2 tbsp of chocolate chips into cookies while they are still hot.
  • Let cookies cool on a baking sheet for 15 minutes before transferring onto a cooling rack to cool more. As cookies cool, you will see delicious grooves covering chocolate chips like a blanket appearing.

Video

Notes

  • Store: Store in a cool dry place in a ventilated container for up to 5 days.
  • Freeze: Bake, cool cookies completely, place in a resealable plastic bag or container and freeze for up to 3 months. Thaw on a counter for a few hours.
  • Softened butter: Softened butter means a dent appears when you touch it with a finger. To soften butter, just leave it at room temperature for 2-3 hours. To speed up softening, cut up in cubes.
  • Salted butter: If you use salted butter, omit salt.
  • Cold baking sheets: Make sure your baking sheets are cold. If you baked other cookies right before, cool sheets off first. I stick mine in the fridge for 5 minutes.
  • Don’t skip dough chilling: Otherwise your cookies will spread like crazy!
  • Gluten free: Check out almond flour chocolate chip cookies for gluten free version. Don’t use any other flour except the one instructed in this recipe.
  • Coconut oil: You may use coconut oil but it results in more crispy rather than chewy cookies, with less grooves and more cake like looking.
  • Liquid sweetener: If you use maple syrup or honey instead of sugar, cookies will come out very cakey. I do not recommend. Sugar and butter melt during baking and create a real cookie experience.
  • Brown sugar: Some love a hint of molasses brown sugar provides. You can sub half the amount of white sugar.

Nutrition

Serving: 1cookie | Calories: 166kcal | Carbohydrates: 18g | Protein: 3g | Fat: 10g | Saturated Fat: 6g | Cholesterol: 36mg | Sodium: 127mg | Fiber: 2g | Sugar: 6g
Course: Dessert
Cuisine: American
Author: Olena Osipov
Did you make this recipe?Mention @ifoodreal or tag #ifoodreal!

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About Olena

Welcome! I grew up in Ukraine watching my grandma cook with simple ingredients. I have spent the last 11 years making it my mission to help you cook quick and easy meals for your family!

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Comments

  1. 5 stars
    I have been looking for a really good chocolate chip cookie recipe! I kept trying healthy recipes using maple syrup and oats and I was not happy with them. These cookies are excellent! Thank you!

  2. Just made these and for some reason the cookies did not flatten at all after baking 🙁

    I followed everything to a T including the use of wheat flower and cooling the dough before putting in the oven. The one thing I did change was that I used 1/4 cup cane sugar and 1/4 cup light brown sugar. The dough seemed a bit dry after combing, maybe that’s why they didn’t spread when cooking? Any thoughts on what might be wrong?

    Thank you!!

    1. The sugar is fine to do that way. How did you measure the flour? A scoop and then fill measuring cup, leveling with a knife is recommended so you don’t ‘overpack’ your flour, which could lead to dry dough. As for cookies not flattening, did you chill for just 20 minutes or longer?

  3. 5 stars
    Olena,
    THANK YOU!!! Your recipe is the BOMB!!! So healthy & simple ing!!!
    I spent about an hr trying too find a healthier, but yet simple with no expensive ing.
    Chocolate chip recipe sooooo NOT easy!
    No me & my family can enjoy a splurge without expensive ingredients!
    Spelt flour really amps the flavour as well!

  4. 5 stars
    These were delicious and just what I needed – a simple recipe. I cut the sugar a little because I prefer less sweet for me and my toddler. They turned out great! I don’t usually rate online recipes, but this was seriously too good not to.

  5. 5 stars
    This recipe is the simplest and best healthy chocolate chip cookie recipe with perfect results every time!! We seriously make these all the time…probably a little too often. Ha! Absolutely my kids favorite!! And soooo quick and easy to whip up and freeze well.

    I use the coconut sugar suggestion in mine and they are amazing. For some reason I don’t need to chill my dough…not sure why but it works!

    Thanks SO much Olena! You continue to make this Momma’s life so much simpler. 🙂

  6. 5 stars
    Awesome recipe! Used turbinado sugar, one cup of whole wheat pastry flour and the other 1/4 cup I subbed oats. Turned out great, and it made for some very happy kids!

  7. 5 stars
    Oh my!! This recipe was sooo good! I made it just as directed and my whole family loved them! I love your blog and all the yummy recipes you have on your site! This is definitely a keeper

  8. 5 stars
    These are delicious. And bake like regular chocolate chip cookies. I used equal amounts of Allulose as the sweetener and they baked beautifully. 1/2 a cup of almond flour instead of regular flour and 1/2 a cup of added whole wheat germ to all purpose flour. Sugar free chocolate chips and pecans were added. This is a great base!!!!thank you.

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