Healthy Lemon Zucchini Muffins are incredibly moist, fluffy and bursting with fresh lemon flavor. They are perfect to take advantage of garden fresh zucchini bounty and make a great choice for healthy breakfast or snack!
I love baking with zucchini during summer. Other favorites include healthy banana zucchini muffins, zucchini carrot muffins and healthy zucchini muffins!
Table of Contents
These healthy lemon zucchini muffins are light, lemony and so moist! Contain only simple ingredients and are so easy to make.
Made with whole wheat flour, plain yogurt, zucchini and a coconut flake topping. Although the topping is optional, it is extremely delicious and adds another layer of fresh lemon flavor!
Every summer, I make my lemon zucchini bread which in turn inspired these healthy zucchini lemon muffins.
I now have a version of my own healthy lemon zucchini bread too. It is 100% healthy, naturally gluten free, and will blow your mind how amazing it tastes!
Of course, my end results ended up being completely different, just like most of my healthy muffin recipes. Lighter and better for you being the name of the game!
What Makes These Muffins Healthy?
- More veggies: No one will notice they are getting an extra serving of zucchini!
- Low oil: Both zucchini and yogurt add moisture while keeping added oil to a minimum.
- Flavorful: Lemon adds a zing of flavor you are going to love!
- Wholesome: Whole wheat flour or spelt flour adds nutritious fiber that keeps you full longer and natural sweetener means you avoid a sugar crash later. You’re welcome!
- Optional topping: Makes muffins taste indulgent and doubles for a healthy dessert.
Ingredients You’ll Need
- Zucchini: Shred zucchini using medium size holes to help incorporate better with the batter. Give a gentle squeeze.
- Yogurt: Use plain yogurt or Greek yogurt with fat content 2% and higher. Non-fat yogurt lacks flavor and moisture.
- Lemon: You want to use only fresh lemon juice and zest. Bottled doesn’t taste nearly the same. Not to mention it is loaded with preservatives.
- Whole wheat or spelt flour: Please stick to these 2 flours for most favorable end result. Baking is a science, all flours are different and do not act the same.
- Oil: We use just 2 tbsp, and any mild tasting oil will work. I often use avocado oil.
- Maple syrup: Any liquid sweetener like honey, agave or brown rice syrup will work. Do not use sugar as it is dry and batter consistency will be thrown off.
- Eggs: For lift and binding, you can replace eggs with flax eggs.
- Muffin topping (optional): Rolled or quick oats, honey or maple syrup, coconut or avocado oil, lemon zest, unsweetened coconut flakes.
How to Make Healthy Lemon Zucchini Muffins
These healthy zucchini lemon muffins come together in one bowl, two if you are making the optional topping!
- Prep: Preheat oven to 350 degrees F and line muffin tin with paper liners. Alternately, use a silicone muffin pan. Shred zucchini and give it a gentle squeeze. Juice and zest lemon.
- Make muffin batter: In a large mixing bowl, add eggs, yogurt, maple syrup, oil, lemon juice, lemon zest, shredded zucchini, baking powder, baking soda, and salt; whisk well to combine. Add flour and stir gently to mix. Do not over mix which could lead to dense muffins.
- Make topping (optional): In a different smaller bowl, add all topping ingredients and stir to combine.
- Fill muffin pan and bake: Using large ice cream scoop, fill 12 openings with batter and if using the topping sprinkle that on top. Bake for 25 minutes or until toothpick inserted in the middle comes out clean.
- Cool: Remove from the oven and let muffins cool in the tin for 10 minutes before transferring onto a cooling rack to cool off more.
Suggested Variations
- Berries: Adds a light fruity flavor. You may also love these healthy lemon blueberry muffins.
- Mini muffins: Bake 12-15 minutes and do a toothpick test.
- Lemon glaze: Omit topping and try this simple glaze from healthy lemon poppy seed bread!
- Almonds: Stir in sliced almonds or chopped walnuts for the crunch.
- Poppy seeds: Pair well with anything lemon! You may also love these healthy lemon poppy seed muffins.
Tips for Best Results
- Whisk well, but stir soft: This tip applies to this muffin and others! Whisk your wet ingredients well or briskly to ensure all your baking staples are dissolved but once you add your flour or other add-ins fold gently. This ensures light and airy baked goods!
- Use a trigger release scoop. When dividing the batter, this is super helpful in getting equal portions. This helps to ensure each muffin gets evenly baked.
- No need to peel your zucchini: Zucchini skin is very thin, so there is no need to peel, plus the green flecks look so colorful.
- Zesting the lemon: Microplane is the best for zesting lemon. In a pinch, box grater will work. Just make sure to zest only yellow part as white pith can add bitter taste to the muffins.
FAQs
I have not tested it with yellow squash, but they usually can be used interchangeably. Be sure to let me know how it goes in the comments!
You could try applesauce or mashed banana.
Baking is a science and using different flours other than the tested whole wheat flour or spelt flour could lead to undesirable muffin results! That being said, you could try 1:1 whole wheat white flour or whole wheat pastry flour substitute.
All purpose flour could be tried, but you will need less or your muffins will be dry.
Yes. You just want to keep an eye on them and lower the baking time. Bake them for 12-15 minutes and check.
Storing and Freezing Tips
I bake muffins all the time because kids love them! I always double or even triple any muffin recipe for freezing.
To store: If not freezing, I store baked muffins on a plate on a kitchen counter covered with a towel for first 2 days. If any are left at that point (let’s be honest), I transfer them to a container with a lid and into the fridge for another 3 days.
I mean this is fantasy I am talking about here. I have 3 men in the house who eat 24 muffins within 24 hours.
To freeze muffins: Bake, cool and place in a gallon size Ziploc container. Release as much air as possible and seal. Freeze for up to 3 months. To thaw, just place on a counter for a few hours.
Storage Tip
Be sure to check out my best practices posts how to store muffins and how to freeze muffins to keep your leftover muffins fresh longer.
More Healthy Lemon and Zucchini Recipes
- Healthy zucchini bread
- Almond flour zucchini muffins
- Healthy lemon blueberry muffins
- Lemon muffins
- Lemon blueberry muffins
- Chocolate zucchini muffins
- Zucchini chocolate chip muffins
Healthy Lemon Zucchini Muffins
Equipment
Ingredients
- 2 large eggs
- 1/2 cup plain yogurt or Greek yogurt 2% + fat
- 1/2 cup maple syrup or honey
- 2 tbsp any mild tasting oil
- 1 large lemon zest and juice of
- 2 cups shredded zucchini on medium hole lightly squeezed
- 2 tsp baking powder
- 1/2 tsp baking soda
- 1/4 tsp salt
- 2 1/3 cups whole wheat flour or spelt flour
Topping (optional):
- 1/4 cup rolled or quick oats
- 1 tbsp honey or maple syrup
- 1 tbsp avocado or coconut oil melted
- 1 large lemon zest of
- 3 tbsp coconut flakes unsweetened
Instructions
- Preheat oven to 350 degrees F and line muffin tin with liners or use silicone muffin tin.
- In a large mixing bowl, add eggs, yogurt, maple syrup, oil, lemon juice, lemon zest, zucchini, baking powder, baking soda, and salt; whisk well to combine. Add flour and stir gently to mix. Do not over mix.
- To make optional topping: In a small bowl, add oats, honey, oil, lemon zest, coconut flakes and mix with a spoon.
- Using large ice cream scoop, fill 12 openings with batter and spoon topping on top (if using). Bake for 25 minutes or until toothpick inserted in the middle comes out clean.
- Remove from the oven and let muffins cool in the tin for 10 minutes before transferring onto a cooling rack to cool off more.
Notes
- Store: On a plate on a kitchen counter covered with a towel for first 2 days. Then transfer them to a container with a lid and into the fridge for another 3 days.
- Freeze: Bake, cool and place in a gallon size Ziploc container. Release as much air as possible and seal. Freeze for up to 3 months. To thaw, just place on a counter for a few hours.
- Lemon: Only fresh. Bottled doesn’t taste nearly the same. Not to mention it is loaded with preservatives.
- Whole wheat or spelt flour: Please stick to these 2 flours for most favorable end result. Baking is a science. All flours are so different. They do not act the same.
- Maple syrup: Any liquid sweetener like honey, agave or brown rice syrup will work. Do not use sugar as it is dry and batter consistency will be thrown off.
- Eggs: You can replace eggs with flax eggs.
Loved it, just started using spelt flour and found this. We love lemon, great combo!
I love spelt flour, it is lighter than whole wheat. Glad you enjoyed my lemon zucchini muffins.:)
These muffins turned out amazing!
Hey Olena,
Can I make these dairy free? Is there anything you suggest I use to substitute for the yogurt?
Yes. Try applesauce instead.
Hi! These look like a delicious way for me to use up some of my zucchini! Do you think that i could also throw in some blueberries? Thanks!
For sure! About a cup.
Noticing your number 2 directions is not very clear “add eggs through salt” but there’s no details about any of the other ingredients
Hi Christina. That means add all ingredients starting with eggs and finishing with salt. All ingredients in between those two.
Hi Olena, do you think I could use buckwheat or brown rice flour for this recipe? Thanks jo
Hi Jo. No, sorry. Flour has to contain gluten.
I made these muffins this morning and they are yummy. I couldn’t wait a whole hour before having one for breakfast. I’ll be making these again.
Yay! As long as the don’t fall apart and you don’t burn your fingers, You can eat them any time.:)
My kids love muffins, and I have to start making them more ๐ Lemon and zucchini! YUM
I can take the same batter and bake it into cake or muffins and my kids will eat muffins but not cake LOL.
Oleanna – these muffins look so darn good! And what an heck of an awesome list of ingredients – love that you used zucchini, coconut oil and yogurt in these – Oooh and that topping!
Thanks, Shashi! That topping was to compensate for the looks of icing. ๐
I can’t wait to make these, I made your healthy blueberry muffins and my family loves them!