Packed with bright flavors of citrus and cranberries, Healthy Cranberry Orange Muffins are an easy holiday healthy breakfast idea or snack! Yogurt gives these muffins both a moist and light texture while whole wheat flour adds fiber. 

Love fruity baked goods? You might also like these almond muffins with berries and raspberry muffins.

close up of cranberry muffins dusted with sugar in a muffin tin

These healthy cranberry orange muffins are not only beautiful to look at but they use simple and wholesome ingredients like many of my healthy muffin recipes that you either already have on hand or can easily find at the store.

Bursting with fresh flavor, these cranberry muffins are not only fluffy and moist, but full of holiday cheer.

Other wholesome holiday baked goods I have been whipping up lately include healthy gingerbread loaf and almond flour cinnamon bread.

Why You’ll Love This Recipe

  • Nutrient dense: These healthy muffins swap processed white flour for fiber rich whole wheat or spelt flour! 
  • Superfood cranberries: Not only do cranberries provide a vibrant pop of color, they are rich in antioxidants and vitamin C.
  • No refined sugar: Maple syrup is less processed as well as has a lower glycemic index and because it is sweeter to the taste you can use less of it in recipes. 
  • Yogurt: Not only does it keep these healthy cranberry muffins moist and fluffy, it adds calcium and is lower in fat than sour cream. 
  • One bowl: You will make the batter for these fresh cranberry muffins in one bowl, because who needs more dishes during the holidays?
  • Versatile: Use fresh, frozen or dried cranberries and muffins can be made gluten free and even egg free! 
  • Perfect balance of flavors: Sweet and tart cranberries combined with juicy citrus is sure to make these deliciously moist muffins ones everyone will love!
close up of healthy cranberry orange muffin with a bite taken out of

Ingredients for Healthy Cranberry Orange Muffins

  • Whole wheat or spelt flour: I love using nutrient dense whole grain flours for muffins. If using all purpose flour, use 1 cup for every 3/4 cups whole wheat. You’ll also need to reserve a bit of flour for dusting the cranberries.
  • Liquid sweetener: Maple syrup, honey, or agave. Do not use dry sweetener, it must be liquid.
  • Plain yogurt: Adds moistness to the muffins. Try to avoid Greek yogurt unless you are a more experienced baker and know how to balance the liquids.
  • Oil: Neutral oils like avocado, melted coconut oil, light olive oil, or melted butter.
  • Egg: For binding and lift, see section on variations for egg free.
  • Orange zest: Pairs so well with cranberries, I also use this combination of flavors for healthy cranberry sauce and healthy cranberry oatmeal cookies.
  • Fresh or frozen cranberries: Either works! You can also use dried cranberries, just be sure they are unsweetened are you will be adding a lot of extra sugar.
  • Baking staples: Pure vanilla extract, baking powder, baking soda and salt for both taste and lift in baked goods.
  • Organic cane sugar (optional): I love to add a little ‘sparkle’ to these muffins when baking them at the holidays! You could substitute granulated monkfruit (or another granulated sugar free product) to keep these lower in sugar.
Flour, maple syrup, yogurt, oil, vanilla, egg, sugar, orange, cranberries, baking powder, baking soda, salt.

How to Make Healthy Cranberry Orange Muffins

This is a no fuss healthy cranberry orange muffins recipe. A little prep and some combining in a bowl, and you’re well on your way!

  • Prep: Preheat the oven and spray a nonstick muffin tin, silicone, or otherwise, with cooking spray. Use muffin cups if you have them. If you can find unbleached and chlorine-free muffin wrappers, feel free to use those. They’re super convenient and pretty cute! It makes releasing out of the tin really easy. Set the prepared tin aside.
  • Grate zest: I use my microplane grater and grate the orange peel over a shallow bowl.
  • Whisk wet ingredients: In a large mixing bowl, whisk the egg for 10 seconds. Then add all of the ingredients with the exception of the flour and cranberries. Whisk until there are no lumps.
  • Add dry ingredients: Add baking staples, whisk, then add flour and gently stir to combine. Over mixing your batter will cause too much air to be released and the result will be dense not fluffy muffins.
  • “Dust” and add cranberries: Grab a medium bowl, and add cranberries and a tbsp of flour. Stir to coat. Once they’re nice and coated, add them to the muffin mix and stir gently to combine.
  • Scoop and sprinkle: Using an ice cream scoop, pour the batter into prepared muffin tins, trying to divide them as evenly as possible. For no other reason than to have them bake evenly and so they look uniform. If you’d like, you can sprinkle the top with a bit of granulated sugar for that ‘holiday’ sparkle!
  • Bake: Bake for a total of 23 minutes, starting with higher heat to help muffins rise to that bakery style look. Then reducing the heat part of the way through. Insert a toothpick into the middle of one of the muffins. If it comes out clean, that’s a good indication they are done. Remove them from the oven to cool before transferring to a cooling rack.


  • Gluten free: Try gluten free all-purpose flour. Bob’s Red Mill makes it. It’s a bit drier, so if you have experience with baking, try adding a bit of liquid like milk to thin out the batter. If you’re not experienced, perhaps don’t take the chance as putting too much milk it may be a problem! Either way, plain yogurt will give your muffins added richness and a slight tang. So good!
  • Egg free: Try replacing egg with flax egg or chia egg.
  • Dried cranberries: If you are using dried cranberries, use unsweetened. This way your muffins won’t be overly sweet.
  • Streusel: Combine flour, butter, and sugar for an indulgent streusel topping.
  • Sugar: The added sprinkling of sugar on top gives the muffins a lovely added texture, a bit of sparkle, and extra sweetness. I use raw cane sugar. You could use turbinado raw sugar or even your favorite granulated sugar free product.
  • Glaze: Alternately, skip the sugar and make an orange glaze by combining icing sugar and orange juice, like I do in my healthy gingerbread loaf.
  • Zest: You could use lemon zest like in lemon zucchini muffins or healthy lemon blueberry muffins, it will add a different flavor profile, but still a lovely citrus taste.
  • Nuts: A small amount 1/4 to 1/2 cup of chopped pecans or walnuts could be added to the batter.
  • Chocolate chips: Add 1/2 cup of your favorite chocolate chips- dark, semi-sweet, white or sugar free.

Tips for Best Results

  • Finding the right yogurt: Use at least 2% for body and thickness but not Greek as it is too thick. See, it really is a science! 
  • Wet to dry ingredient ratio: If you use dry sweetener like sugar, batter consistency will be thrown off and muffins will not turn out.
  • Don’t over mix the batter: Do not use an electric mixer for this recipe, it will result in dense muffins. Use a spatula and mix gently to combine.
  • Use pure vanilla extract: For both taste and health reasons.
  • Proper flour measurements: Although you can get creative with flavours and toppings, measurements aren’t as flexible when it comes to baking. I like to use the scoop and level method for flour. Scooping adds air into the flour and then leveling with a knife ensures your measurement is precise.


Are cranberry orange muffins healthy?

This really depends on your definition of healthy! My recipe uses wholesome ingredients for a healthier cranberry orange muffin that contains whole grains, no refined sugar and gets its flavor from fresh orange zest and cranberries.

Can I make these cranberry and orange muffins vegan?

Use an egg replacer and a dairy free yogurt. I have not tested this recipe with a dairy free yogurt, so I can’t say exactly what kind to use. If you try, leave a comment!

Can I make these healthy cranberry orange muffins sugar free?

While they still may have some naturally occurring sugar, you could use a liquid sugar free sweetener in place of maple syrup and then a granulated sugar free product for the sprinkle on top.

What type of cranberries should I use?

That is the beauty of these muffins, use fresh, frozen or even dried cranberries!

Can I use almond flour in cranberry orange muffins?

Unfortunately almond flour or coconut flour will not work in these muffins. Try making almond flour blueberry muffins or chocolate coconut flour muffins instead!

Can I substitute another berry for cranberries?

You could substitute blueberries or just make healthy blueberry muffins.

healthy cranberry orange muffins finished ready to eat

How to Serve

These healthy cranberry muffins are decadent enough to be enjoyed for dessert but healthy enough to grab for breakfast!

Breaking open one of these little treats and watching the steam release is enough to make your heart sing. Enjoy!

How to Store

Store: In a cool dry place for up to 3-4 days. Place in refrigerator for longer storage up to 5 days.

Freeze: In a freezer safe container for up to 3 months.

Storage Tip

For more best muffin storage practices, be sure to check out my posts how to store muffins and how to freeze muffins.

More Healthy Muffins Recipes to Try

Alternately, you may love this list of my healthy muffin recipes!

showing 6 cranberry orange muffins in blue muffin tin
Cranberry Orange Muffins

Healthy Cranberry Orange Muffins

Packed with bright flavors of citrus and cranberries, Healthy Cranberry Orange Muffins are an easy holiday breakfast or snack! Yogurt gives these muffins both a moist and light texture while whole wheat (or spelt) flour adds fiber. 
4.74 from 15 votes
Servings 12
Calories 248
Prep Time 15 minutes
Cook Time 23 minutes
Total Time 38 minutes


  • 1 large egg
  • 1 cup plain yogurt
  • 1/4 cup avocado, melted coconut, light olive oil or melted butter
  • 1 cup maple syrup, honey or agave
  • 1 large orange, zest of 1 tbsp
  • 1 tbsp pure vanilla extract
  • 1 tbsp baking powder
  • 1/4 tsp baking soda
  • 1/4 tsp salt
  • 3 cups whole wheat or spelt flour + 1 tbsp, for dusting berries
  • 2 cups cranberries fresh or frozen
  • 1 tbsp sugar for sprinkling on top


  • Preheat oven to 425 degrees F and spray non-stick 12 muffin tin with cooking spray. Set aside.
  • In a large mixing bowl, whisk the egg for 10 seconds.
  • Add yogurt, oil, maple syrup, orange zest, vanilla extract and whisk. Add baking powder, baking soda and salt; whisk very well until no lumps. Add flour and gently stir until well incorporated. Do not over mix otherwise muffins will be tough.
  • In a medium bowl, add cranberries and 1 tbsp flour, stir to coat with a spoon. Add to the bowl with batter and give a few more gentle stirs to incorporate.
  • Using an ice cream scoop, divide batter between 12 openings of previously prepared muffin tin and sprinkle with sugar.
  • Bake for 10 minutes in preheated to 425 degrees F oven. Reduce heat to 375 degrees F (no need to wait for oven to cool off) and bake for another 13 minutes or until a toothpick inserted in the centre comes out clean.
  • Remove from the oven, let muffins cool for about 5 minutes and transfer to a cooling rack to cool off a bit more.


  • Store: Store in a cool dry place for up to 3-4 days.
  • Freeze: In freezer safe container up to 3 months.
  • Has to be liquid sweetener: If you use dry sweetener like sugar, batter consistency will be thrown off and muffins will not turn out.
  • All purpose flour? I have not tried it but you can use 1 cup of white flour for every 3/4 cup of whole wheat flour that recipe calls for.
  • Gluten free flour? The only one I would recommend is all-purpose gluten free flour. 
  • Egg free: Try replacing egg with flax egg or chia egg.
  • Yogurt: Greek yogurt is more thick than regular because whey has been removed, batter may need to be thinned. I use at least 2% yogurt. Skim yogurt will work.
  • Sugar: The added sprinkling of raw cane sugar on top gives the muffins a lovely added texture, a bit of sparkle, and extra sweetness. Omit, or use your favorite sugar. 
See recipe post for more tips and FAQs.


Serving: 1muffins | Calories: 248kcal | Carbohydrates: 44g | Protein: 5g | Fat: 6g | Saturated Fat: 1g | Cholesterol: 18mg | Sodium: 199mg | Fiber: 4g | Sugar: 19g
Course: Dessert, Muffins and Quick Bread
Cuisine: American
Author: Olena Osipov
Did you make this recipe?Mention @ifoodreal or tag #ifoodreal!

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About Olena

Welcome! I grew up in Ukraine watching my grandma cook with simple ingredients. I have spent the last 11 years making it my mission to help you cook quick and easy meals for your family!

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    1. You could try, that would look very festive for the holidays! I would keep an eye on baking time, it may be more or less.

    1. You could try and I think it would be okay, but I do worry that the dry ingredients to wet ingredients ratio might be off then. If you find that your batter is dry, try a liquid sugar free syrup for the other 1/4 cup.

  1. Are you thinking of doing an almond flour version of this? Or is there a recipe on this website that I could turn into cranberry orange muffins?

  2. 5 stars
    It is really good. I used 1 cup of dried cranberries instead of 2 cups of fresh ones and it was still very good.

  3. Mine are baking as I write this🙂

    I’ve had this question in mind for a while..: I learned to mix all the dry ingredients together, including baking soda and baking powder when baking. So I’m curious as to why you mix these latter two to the wet ingredients? I know it works as I follow your recipes exactly but I’m curious.


    1. Hi Marie. Yes, that’s the golden rule of baking in the past. It is to make sure even distribution of leavening agents throughout entire batter and help dough rise properly. It is more forgiving with muffins, cookies etc. and if you make sure you break all lumps and mix them well, I do not see a need to dirty another bowl. But you can.

  4. 5 stars
    I love these muffins for their “fresh” and slightly zingy taste. Every time I cook turkey over the holidays, I end up throwing out the leftover cranberry sauce. This year I decided to find a healthy muffin recipe which is extremely hard to do as most call for lots of sugar and/or butter/oil. I was happy to find your recipe and swapped out the cup of maple syrup for the cup of cranberry sauce (with berries). The only other change I made was to add a mix of frozen berries (as I realised too late that the recipe calls for 2 cups of cranberries). I ended up having to bake the muffins for 15 extra minutes at 375 than your recipe calls for but they finally passed the toothpick test and are delicious!

    1. Hey Marianne! What a creative idea to use the leftover cranberry sauce! Glad the muffins turned out great 🙂

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